Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs17860142 chr21:34607870 C/G 0.000294 172 21.9 31.97 25.17 KM Plot
PCPG rs17860165 chr21:34611730 C/T 0.000286 176 21.9 31.2 25.08 KM Plot
PCPG rs1796524 chr6:26449219 G/A 6.01E-7 178 24.53 32.6 10.68 KM Plot
PCPG rs1799881 chr16:71602471 T/C 1.01E-5 174 24.85 30.93 14.5 KM Plot
PCPG rs1800331 chr16:89858417 C/A 0.000159 177 25.87 20.37 36.37 KM Plot
PCPG rs1800339 chr16:89839637 C/A 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs1800344 chr16:89816367 T/G 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs1800355 chr16:89813194 C/T 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs1802236 chr12:56679751 A/G 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs1805051 chr3:195778972 C/T 2.07E-11 173 24.62 36 6.87 KM Plot
PCPG rs181006907 chr12:56689535 G/A 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs181042982 chr7:1110350 G/GCA 0.000259 174 25.7 24.95 49.58 KM Plot
PCPG rs1811322 chr16:56639705 A/T 0.000211 178 25.87 23.58 24.23 KM Plot
PCPG rs1813653 chr3:80579175 A/G 6.94E-5 176 19.53 24.53 27.2 KM Plot
PCPG rs182251041 chr16:89907164 C/T 0.000182 173 25.87 23.37 36.37 KM Plot